Journal articles

  1. Identification of miR-29b targets using 3-cyanovinylcarbazole containing mimics Vanichkina, Darya P, Choudhary, Anupma, Ender, Christine, Crawford, Joanna, Baillie, Gregory J, Calcino, Andrew D, Ru, Kelin, and Taft, Ryan J RNA 2018
  2. Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development Vanichkina, Darya Pavlovna, Marques, Sueli, Bruggen, David, Floriddia, Elisa Mariagrazia, Munguba, Hermany, Väremo, Leif, Giacomello, Stefania, Falcão, Ana Mendanha, Meijer, Mandy, Björklund, Åsa Kristina, and others, Developmental cell 2018
  3. Human iPSC-Derived Cerebellar Neurons from a Patient with Ataxia-Telangiectasia Reveal Disrupted Gene Regulatory Networks Nayler, Sam P, Powell, Joseph E, Vanichkina, Darya P, Korn, Othmar, Wells, Christine A, Kanjhan, Refik, Sun, Jian, Taft, Ryan J, Lavin, Martin F, and Wolvetang, Ernst J Frontiers in cellular neuroscience 2017
  4. Challenges in defining the role of intron retention in normal biology and disease Vanichkina, Darya P, Schmitz, Ulf, Wong, Justin J-L, and Rasko, John EJ 2017
  5. Amiodarone induces cell wall channel formation in yeast Hansenula polymorpha Kalebina, Tatyana S, Sokolov, Sviatoslav S, Selyakh, Irina O, Vanichkina, Darya P, and Severin, Fedor F SpringerPlus 2015
  6. The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing Barry, Guy, Briggs, JA, Vanichkina, DP, Poth, EM, Beveridge, NJ, Ratnu, VS, Nayler, SP, Nones, K, Hu, J, Bredy, TW, and others, Molecular psychiatry 2014
  7. RevSex duplication-induced and sex-related differences in the SOX9 regulatory region chromatin landscape in human fibroblasts Lybæk, Helle, Bruijn, Diederik, Engelsman-van Dijk, Anke HA, Vanichkina, Darya, Nepal, Chirag, Brendehaug, Atle, and Houge, Gunnar Epigenetics 2014

Conference presentations

  1. The Grammar of Graphics Vanichkina, Darya P In Sydney ResBaz 2018 Macquarie University (invited talk) 2018
  2. Training the trainer: Software Carpentry Instructor Training Vanichkina, Darya P In ANDS-NECTAR-RDS Workshop: Powering up your 2018 (data skills) training (invited talk) 2018
  3. Big Data Biology for Pythonistas: Getting in on the Genomics Revolution Vanichkina, Darya P In PyCon Au (talk selected from abstracts) 2016
  4. Temporal and developmental dynamics of the oligodendrocyte precursor transcriptome Vanichkina, Darya P, Marques, Sueli, Mendanha Falcao, Ana, Taft, Ryan J, and Castelo-Branco, Goncalo In Sydney Bioinformatics Research Symposium (talk selected from abstracts) 2016
  5. Temporal and developmental dynamics of the oligodendrocyte precursor transcriptome Vanichkina, Darya P, Marques, Sueli, Mendanha Falcao, Ana, Taft, Ryan J, and Castelo-Branco, Goncalo In Proceedings of the 37th Lorne Genome Conference (poster presentation) 2016
  6. Ataxia-telangiectasia iPS-derived neuronal transcriptome Vanichkina, Darya P, Nayler, Sam, Kozlov, Sergei, Lavin, Martin, Taft, Ryan J, and Wolvetang, Ernst In Proceedings of the 35th Lorne Genome Conference (poster presentation) 2014
  7. Activity-dependent transcriptional dynamics in mouse cortical and human iPS - derived neurons Vanichkina, Darya P, Barry, Guy, Briggs, James, Poth, Erin, Ratnu, Vikram, Bredy, Tim, Blackshaw, Seth, Wolvetang, Ernst, and Mattick, John S In Proceedings of the 33rd Lorne Genome Conference (poster presentation) 2012
  8. A Novel Non-coding Human Transcript from Locus ATP4A-HAUS5 (Chr19) Vanichkina, Darya P, Zinovyeva, Marina V., and Azhikina, Tatyana L. In XVII International student, postgraduate and young scientist conference ’Lomonosov’ (poster presentation) 2010
  9. A Novel Non-coding Human Transcript from Locus ATP4A-HAUS5 (Chr19) Vanichkina, Darya P, Zinovyeva, Marina V., and Azhikina, Tatyana L. In 14th International Pushchino School-Conference for Young Scientists ’Biology- Science of the XXI century’ (poster presentation) 2010
  10. Characterization of a Novel Transcript from Human Locus ATP4A-KIAA0841 (Chr19) Vanichkina, Darya P, Zinovyeva, Marina V., and Azhikina, Tatyana L. In XXII Winter School for Young Scientists ’Promising Areas of Physico-chemical Biology and Biotechnology’ (poster presentation) 2010

PhD

  1. Marvellous complexity: Characterising the transcriptome of the mammalian nervous system using RNA sequencing Vanichkina, Darya P 2016